Comparasion of Microbiome Composition in Acne Vulgaris Using Metagenomic Shotgun and 16s Rrna
Abstract
Acne vulgaris is a common skin disease in adolescents and young adults. One factor that plays a role in the development of acne vulgaris is changes in the composition of the microbiome in the skin. The microbiome is the community of microorganisms that live on the surface of the skin and plays an important role in maintaining the ecological balance of the skin. Research on microbiome composition in acne vulgaris has been conducted using various analytical methods, including shotgun metagenomics and 16S rRNA. The aim of this study was to compare the microbiome composition in acne vulgaris using shotgun metagenomics and 16S rRNA. This research method is a literature review while data collection techniques are carried out by library studies obtained from 3 databases Pubmed, Google Scholar and Science Direct. The collected data were then analyzed using qualitative analysis. The results showed that some of the most common bacteria in acne vulgaris, such as Propionibacterium acnes, Staphylococcus epidermidis, and Staphylococcus aureus. In recent years, microbiota screening has been developed using NGS techniques using metagenomic whole genome shotgun and 16S rRNA DNA sequencing analysis. NGS techniques have been able to determine the microbiota of facial skin, and differentiate the bacterial abundance of acne-prone and healthy skin.
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Abate & Turnbaugh, P. (2023). Microbiome single cell atlases generated with a commercial instrument.
Adetuyi & Oloke, J. K. (2022). Involvement of free radicals in the ageing of cutaneous membrane. World News of Natural Sciences, 43, 11–37.
Avtanski, D., Hadzi-Petrushev, N., Josifovska, S., Mladenov, M., & Reddy, V. (2023). Emerging technologies in adipose tissue research. Adipocyte, 12(1), 2248673.
Barnard, E., & Li, H. (2017). Shaping of cutaneous function by encounters with commensals. The Journal of Physiology, 595(2), 437–450.
Boulund & Kristiansson, E. (2018). Computational and statistical considerations in the analysis of metagenomic data. In Metagenomics (pp. 81–102). Elsevier.
Choi, H. S., Seong, H., Kim, S.-A., Song, Y., Sim, E. Y., Kang, H., & Han, N. S. (2023). Lysine-fortified rice germ yogurt fermented with Lactiplantibacillus plantarum JSA 22 and its beneficial health effects. Journal of Functional Foods, 109, 105787.
Chowdhari, S., Rana, S., Rana, S., Morrison, C. M., Abney, S. E., Singh, R., Gurian, P. L., Kumar, A., Kumar, A., & Betancourt, W. Q. (2022). Quantitative Assessment of Microbial Pathogens and Indicators of Wastewater Treatment Performance for Safe and Sustainable Water Reuse in India. Microbiology Spectrum, 10(6), e01720-22.
Clayton, R. W., Langan, E. A., Ansell, D. M., de Vos, I. J. H. M., Göbel, K., Schneider, M. R., Picardo, M., Lim, X., van Steensel, M. A. M., & Paus, R. (2020). Neuroendocrinology and neurobiology of sebaceous glands. Biological Reviews, 95(3), 592–624.
de Vries, J. J. C., Brown, J. R., Fischer, N., Sidorov, I. A., Morfopoulou, S., Huang, J., Munnink, B. B. O., Sayiner, A., Bulgurcu, A., & Rodriguez, C. (2021). Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples. Journal of Clinical Virology, 141, 104908.
Deliana, R., Amalia, R., & Jusuf, N. K. (2019). Hubungan Indeks Massa Tubuh dengan Akne Vulgaris pada Siswa-Siswi SMA Negeri 7 Medan. Cermin Dunia Kedokteran, 46(4), 253–255.
Dreno, B., Dekio, I., Baldwin, H., Demessant, A. L., Dagnelie, M., Khammari, A., & Corvec, S. (2023). Acne microbiome: From phyla to phylotypes. Journal of the European Academy of Dermatology and Venereology.
Ferreira-Cerca, S. (2022). The dark side of the ribosome life cycle. RNA Biology, 19(1), 1045–1049.
Fitz-Gibbon, S., Tomida, S., Chiu, B.-H., Nguyen, L., Du, C., Liu, M., Elashoff, D., Erfe, M. C., Loncaric, A., & Kim, J. (2013). Propionibacterium acnes strain populations in the human skin microbiome associated with acne. Journal of Investigative Dermatology, 133(9), 2152–2160.
Gilaberte, Y., Prieto-Torres, L., Pastushenko, I., & Juarranz, Á. (2016). Anatomy and Function of the Skin. In Nanoscience in dermatology (pp. 1–14). Elsevier.
Gunnarsson & Sparr, E. (2021). Extraction of natural moisturizing factor from the stratum corneum and its implication on skin molecular mobility. Journal of Colloid and Interface Science, 604, 480–491.
Hashim, Z. H., Hamdan, F. B., & Al-Salihi, A. R. (2015). Autonomic dysfunction in women with polycystic ovary syndrome. Iranian Journal of Reproductive Medicine, 13(1), 27.
Heng, A. H. S., Say, Y.-H., Sio, Y. Y., Ng, Y. T., & Chew, F. T. (2022). Epidemiological risk factors associated with acne vulgaris presentation, severity, and scarring in a Singapore Chinese population: a cross-sectional study. Dermatology, 238(2), 226–235.
Iskandar, U. (2013). Kepemimpinan Kepala Sekolah Dalam Peningkatan Kinerja Guru. Jurnal Visi Ilmu Pendidikan, 10(1), 1018–1027. https://doi.org/10.26418/jvip.v10i1.2061
Jiang, X., Liu, J., Xi, Y., Zhang, Q., Wang, Y., Zhao, M., Lu, X., Wu, H., Shan, T., & Ni, B. (2023). Virome of high-altitude canine digestive tract and genetic characterization of novel viruses potentially threatening human health. Msphere, e00345-23.
Kim, J., Lee, S., Moodley, Y., Yagnik, L., Birnie, D., & Dwivedi, G. (2023). The role of the host-microbiome and metabolomics in sarcoidosis. American Journal of Physiology-Cell Physiology.
Leung, A. K. C., Barankin, B., Lam, J. M., Leong, K. F., & Hon, K. L. (2021). Dermatology: how to manage acne vulgaris. Drugs in Context, 10.
Li, X., He, C., Chen, Z., Zhou, C., Gan, Y., & Jia, Y. (2017). A review of the role of sebum in the mechanism of acne pathogenesis. Journal of Cosmetic Dermatology, 16(2), 168–173.
Liu, G., Li, T., Zhu, X., Zhang, X., & Wang, J. (2023). An independent evaluation in a CRC patient cohort of microbiome 16S rRNA sequence analysis methods: OTU clustering, DADA2, and Deblur. Frontiers in Microbiology, 14.
Lynn, D. D., Umari, T., Dunnick, C. A., & Dellavalle, R. P. (2016). The epidemiology of acne vulgaris in late adolescence. Adolescent Health, Medicine and Therapeutics, 13–25.
Mahto, A. (2017). Acne vulgaris. Medicine, 45(6), 386–389.
McLaughlin, J., Watterson, S., Layton, A. M., Bjourson, A. J., Barnard, E., & McDowell, A. (2019). Propionibacterium acnes and acne vulgaris: new insights from the integration of population genetic, multi-omic, biochemical and host-microbe studies. Microorganisms, 7(5), 128.
Miles-Jay, A., Snitkin, E. S., Lin, M. Y., Shimasaki, T., Schoeny, M., Fukuda, C., Dangana, T., Moore, N., Sansom, S. E., & Yelin, R. D. (2023). Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit. Nature Medicine, 1–9.
Nakatsuji, T., Cheng, J. Y., & Gallo, R. L. (2021). Mechanisms for control of skin immune function by the microbiome. Current Opinion in Immunology, 72, 324–330.
O’Neill, A. M., & Gallo, R. L. (2018). Host-microbiome interactions and recent progress into understanding the biology of acne vulgaris. Microbiome, 6, 1–16.
Odom, A. R., Faits, T., Castro-Nallar, E., Crandall, K. A., & Johnson, W. E. (2023). Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data. Scientific Reports, 13(1), 13957.
Ogonowska, P., Gilaberte, Y., Barańska-Rybak, W., & Nakonieczna, J. (2021). Colonization with Staphylococcus aureus in atopic dermatitis patients: attempts to reveal the unknown. Frontiers in Microbiology, 11, 567090.
Oh, Y. (2021). Acne vulgaris.
Parris, D. J., Morgan, M. M., & Stewart, F. J. (2019). Feeding rapidly alters microbiome composition and gene transcription in the clownfish gut. Applied and Environmental Microbiology, 85(3), e02479-18.
Prescott, S. L., Larcombe, D.-L., Logan, A. C., West, C., Burks, W., Caraballo, L., Levin, M., Etten, E. Van, Horwitz, P., & Kozyrskyj, A. (2017). The skin microbiome: impact of modern environments on skin ecology, barrier integrity, and systemic immune programming. World Allergy Organization Journal, 10, 1–16.
Putri, N. N. H. (2018). Perbedaan Jaringan Granulasi, Angiogenesis Dan Fibroblas Pada Luka Bakar Derajat Ii Antara Pemberian Topikal Sel Punca Mesenkimal Tali Pusat Manusia Dengan Krim Silver Sulfadiazine Pada Tikus Putih (Rattus norvegicus).
Qonnayda, U., & Sutini, T. (2022). Hubungan Akne Vulgaris Dengan Citra Tubuh Remaja Di Desa Lonam Kabupaten Sambas Kalimantan Barat. Indonesian Journal of Nursing Sciences and Practice, 4(1), 41–48.
Sacotte, R., & Silverberg, J. I. (2018). Epidemiology of adult atopic dermatitis. Clinics in Dermatology, 36(5), 595–605.
Shao, X., Liu, L., Zhou, Y., Zhong, K., Gu, J., Hu, T., Yao, Y., Zhou, C., & Chen, W. (2023). High-fat diet promotes colitis-associated tumorigenesis by altering gut microbial butyrate metabolism. International Journal of Biological Sciences, 19(15), 5004.
Su, Y., Zouboulis, C. C., Cui, W., & Zhang, A. (2023). Lactoferrin regulates sebogenesis and inflammation in SZ95 human sebocytes and mouse model of acne. Journal of Cosmetic Dermatology, 22(4), 1361–1368.
Tamames, J., & Puente-Sánchez, F. (2019). SqueezeMeta, a highly portable, fully automatic metagenomic analysis pipeline. Frontiers in Microbiology, 9, 3349.
Tao, X., Franasiak, J. M., Zhan, Y., Scott III, R. T., Rajchel, J., Bedard, J., Newby Jr, R., Scott, R. T., Treff, N. R., & Chu, T. (2017). Characterizing the endometrial microbiome by analyzing the ultra-low bacteria from embryo transfer catheter tips in IVF cycles: Next generation sequencing (NGS) analysis of the 16S ribosomal gene. Human Microbiome Journal, 3, 15–21.
Wright, R. J., Comeau, A. M., & Langille, M. G. I. (2023). From defaults to databases: parameter and database choice dramatically impact the performance of metagenomic taxonomic classification tools. Microbial Genomics, 9(3).
Zhang, L., Li, X., Liu, X., Wu, X., Xu, Q., Qu, J., Li, X., Zhu, Y., Wen, L., & Wang, J. (2023). High-Carbohydrate Diet Consumption Poses a More Severe Liver Cholesterol Deposition Than a High-Fat and High-Calorie Diet in Mice. International Journal of Molecular Sciences, 24(19), 14700.
Zhao, J., Wang, Y., Jiang, L., & Mu, Y. (2020). The application of skin care product in acne treatment. Dermatologic Therapy, 33(6), e14287.
Zouboulis & Jemec, G. B. E. (2020). Alterations in innate immunity and epithelial cell differentiation are the molecular pillars of hidradenitis suppurativa. Journal of the European Academy of Dermatology and Venereology, 34(4), 846–861.
DOI: http://dx.doi.org/10.30829/contagion.v5i3.15393
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